diff -r c4f00b77b6d4 -r 7459867ebf98 hotspot/src/share/vm/classfile/moduleEntry.cpp
--- a/hotspot/src/share/vm/classfile/moduleEntry.cpp	Fri Dec 02 11:07:27 2016 +0100
+++ b/hotspot/src/share/vm/classfile/moduleEntry.cpp	Mon Dec 05 11:45:20 2016 -0500
@@ -301,6 +301,14 @@
   entry->set_version(version);
   entry->set_location(location);
 
+  if (ClassLoader::is_in_patch_mod_entries(name)) {
+    entry->set_is_patched();
+    if (log_is_enabled(Trace, modules, patch)) {
+      ResourceMark rm;
+      log_trace(modules, patch)("Marked module %s as patched from --patch-module", name->as_C_string());
+    }
+  }
+
   TRACE_INIT_MODULE_ID(entry);
 
   return entry;